PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC603_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 269aa    MW: 30825.8 Da    PI: 8.3152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC603_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.7e-09136182555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++sLq
  RrC603_p3 136 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 182
                999**********************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-16129201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-7129186No hitNo description
PROSITE profilePS5088814.634131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17133200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6136182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDLTGLKWLQ QQQQMVSPEF LQILGSDGRE ELRRVETYLG NNIYDTIDGC ISRTSSFQME  60
PVKNNEENRA VALLNKRKSE GKTETREKKK KIKAEDETES SMKGKSNMSN TETSSDIHKQ  120
DYIHVRARRG EATDRHSLAE RARREKISKK MKCLQDIVPG CNKVTGKAGM LDEIINYVQS  180
LQQQVEFLSM KLSVLNPQLE FHINELSMMA DLRSFSLHQQ GSLDYSFMNS NQTTSLVAKN  240
DTSSSWDIHS QCPYNNLRTD PVSNFFSLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17590KRKSEGKTETREKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527230.0AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138432.11e-167PREDICTED: transcription factor BEE 2-like
SwissprotQ93VJ41e-156BEE2_ARATH; Transcription factor BEE 2
TrEMBLA0A078I0S81e-165A0A078I0S8_BRANA; BnaA03g53460D protein
STRINGAT4G36540.11e-153(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.21e-139BR enhanced expression 2